MEWpy’s documentation

Contents:

• Introduction
• Installation
• Phenotype Simulation
  • Loading metabolic models
  • Phenotype simulation
  • Reaction fluxes
  • Retrieving and setting the model objective
  • Adding additional constraints to phenotype simulations
  • Flux Variability Analysis
  • Genes and reactions essentiality
• Optimization Tasks
  • Optimization Engines
  • Strain Optimization Strategies and Methods
• Evaluation Functions
• Optimization Problems
  • Reaction Constraint Problems
  • Gene Constraint Problems
  • Enzymatic Constraints Problems
  • Regulatory Constraints
• GERM models and analysis
  • Reading GERM models
  • Working with GERM models
  • Working with GERM model variables
  • Working with GERM model analysis
  • FBA and pFBA
  • FVA and deletions
  • Regulatory truth table
  • RFBA
  • SRFBA
  • iFVA and iDeletions
  • PROM
  • CoRegFlux
• Options
• src
  • mewpy package

Indices and tables

• Module Index

• Search Page