MEWpy
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Contents:
Introduction
Installation
Phenotype Simulation
Optimization Tasks
Evaluation Functions
Optimization Problems
GERM models and analysis
Options
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MEWpy
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MEWpy’s documentation
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Contents:
Introduction
Installation
Phenotype Simulation
Loading metabolic models
Phenotype simulation
Reaction fluxes
Retrieving and setting the model objective
Adding additional constraints to phenotype simulations
Flux Variability Analysis
Genes and reactions essentiality
Optimization Tasks
Optimization Engines
Strain Optimization Strategies and Methods
Evaluation Functions
Optimization Problems
Reaction Constraint Problems
Gene Constraint Problems
Enzymatic Constraints Problems
Regulatory Constraints
GERM models and analysis
Reading GERM models
Working with GERM models
Working with GERM model variables
Working with GERM model analysis
FBA and pFBA
FVA and deletions
Regulatory truth table
RFBA
SRFBA
iFVA and iDeletions
PROM
CoRegFlux
Options
src
mewpy package
Indices and tables
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Module Index
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